Orive, M.E. (2019) The evolution of sex, in The Theory of Evolution (S.M. Scheiner and D.P. Mindell, eds.), University of Chicago Press, in press.
Agusto, F.B., M.C.A. Leite, and M.E. Orive. (2019) The transmission dynamics of a within- and between-hosts malaria model. Ecological Complexity 38:31-55, https://doi.org/10.1016/j.ecocom.2019.02.002
Orive, M.E., R.D. Holt, and M. Barfield. (2018) Evolutionary rescue in a linearly changing environment: Limits on predictability. Bulletin of Mathematical Biology, https://doi.org/10.1007/s11538-018-0504-5
Chang, E.S., M.E. Orive, and P. Cartwright. (2018) Non-clonal coloniality: Genetically chimeric colonies through fusion of sexually produced polyps in the hydrozoan Ectopleura larynx. Evolution Letters 2(4):442-455, doi.org/10.1002/evl3.68.
Orive, M.E., M. Barfield, C. Fernandez, and R.D. Holt. (2017) Effects of clonal reproduction on evolutionary lag and evolutionary rescue. American Naturalist 190:469-490. https://doi.org/10.1086/693006.
Carter, J. M., M.E. Orive, L.M. Gerhart, J. Stern, R.M. Marchin, J. Nagel, and J.K. Ward. (2017) Warmest extreme year in U.S. history alters thermal requirements for tree phenology. Oecologia, 183(4):1197-1210. doi:10.1007/s00442-017-3838-z
Orive, M.E. (2016) Recombination and selection, in The Encyclopedia of Evolutionary Biology (R.M. Kliman, ed.) vol. 3, pp. 417-424, Oxford: Academic Press.
Barfield, M., M.E. Orive, and R.D. Holt. (2015) The role of pathogen shedding in linking within- and between-host pathogen dynamics. Mathematical Biosciences, 270:249-262. https://doi.org/10.1016/j.mbs.2015.04.010
Marriage, T. and M.E. Orive. (2012) Mutation-selection balance and mixed mating with asexual reproduction. Journal of Theoretical Biology, 308:25-35. https://doi.org/10.1016/j.jtbi.2012.04.033
Orive, M.E. (2011) Putting the R in evolutionary modeling (book review). Evolution 65(3): 912–914. http://www.jstor.org/stable/29782976
Marriage, T.N., S. Hudman, M.E. Mort, M.E. Orive, R.G. Shaw and J.K. Kelly. (2009) Direct estimation of the mutation rate at dinucleotide microsatellite loci in Arabidopsis thaliana (Brassicaceae). Heredity 103:310-317. doi: 10.1038/hdy.2009.67
Orive, M.E., M.N. Stearns, J. K. Kelly, M. Barfield, M.S. Smith and R.D. Holt. (2005). Viral infection in internally structured hosts. I. Conditions for persistent infection. Journal of Theoretical Biology 232(4):453-466. https://doi.org/10.1016/j.jtbi.2004.08.023
Williamson, S., S.M. Perry, C.D. Bustamante, M.E. Orive, M.N. Stearns, and J.K. Kelly. (2005). A statistical characterization of consistent patterns of human immuno-deficiency virus evolution within infected patients. Mol. Biol. Evol. 22:456-468. https://doi.org/10.1093/molbev/msi029
Kelly, J. K., S. Williamson, M.E. Orive, M. Smith, and R. D. Holt (2003). Linking dynamical and population genetic models of persistent viral infection. American Naturalist 162:14-28. https://doi.org/10.1086/375543
Orive, M.E. and N. H. Barton (2002). Associations between cytoplasmic and nuclear loci in hybridizing populations. Genetics 162:1469-1485. http://www.genetics.org/content/genetics/162/3/1469.full.pdf
Williamson, S. and M.E. Orive (2002). The genealogy of a sequence subject to purifying selection at multiple sites. Molecular Biology and Evolution, 19:1376-1384. https://doi.org/10.1093/oxfordjournals.molbev.a004199
Orive, M.E. (2001). Somatic mutations in organisms with complex life histories. Theoretical Population Biology, 59:235-249. https://doi.org/10.1006/tpbi.2001.1515
Asmussen, M.A. and M.E. Orive (2000). The effects of pollen and seed migration on nuclear-dictyoplasmic systems. I. Nonrandom associations and equilibrium structure with both maternal and paternal cytoplasmic inheritance. Genetics 155:813-831. http://www.genetics.org/content/genetics/155/2/813.full.pdf
Orive, M.E. and M.A. Asmussen (2000). The effects of pollen and seed migration on nuclear-dictyoplasmic systems. II. A new method for estimating plant gene flow from joint nuclear-cytoplasmic data. Genetics 155:833-854. http://www.genetics.org/content/genetics/155/2/833.full.pdf
Otto, S.P. and M.E. Orive (1995). Evolutionary consequences of mutation and selection within an individual. Genetics 141:1173 - 1187. http://www.genetics.org/content/genetics/141/3/1173.full.pdf
Orive, M.E. (1995). Senescence in organisms with clonal reproduction and complex life histories. American Naturalist 145:90 - 108. https://doi.org/10.1086/285729
Orive, M.E. (1993). Effective population size in organisms with complex life histories.
Theoretical Population Biology 44:316 - 340. https://doi.org/10.1006/tpbi.1993.1031
Orive, M.E. and J. F. Baughman (1989). Effects of handling on Euphydryas editha. Journal of the Lepidopterists' Society 43(3):244 - 247.